Ecology and Evolutionary Biology at UofT
CAGEF - Centre for the Analysis of Genome Evolution and Function
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Bioedit (free sequence editting/alignment software)
T-Coffee (online sequence alignment)
Common protocols for molecular biology (courtesy of Mark Rausher's lab)
Phylogeny programs (by Joe Felsenstein ... brace yourself)
Mesquite (various techniques for evolutionary analyses)
Bayesian comparative analyses (by Mark Pagel)
MrBayes (Bayesian inference of phylogenies)
PAML (molecular evolution software)
Phylocom (phylogenies of communities)